BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB013E12LP1|AL426547
(856 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1205 1107 0.0
>3x_Contig1205
Length = 5507
Score = 1107 bits (558), Expect = 0.0
Identities = 580/584 (99%), Gaps = 3/584 (0%)
Strand = Plus / Plus
Query: 274 ttctgggcttcctgtgaagctggtacttatatgagaactttatgtgtccatcttggtatg 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttctgggcttcctgtgaagctggtacttatatgagaactttatgtgtccatcttggtatg 60
Query: 334 cttttaggtgtcggtggccatatgcaagagttgcgtcgtgttagatccggtgctttgtcc 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cttttaggtgtcggtggccatatgcaagagttgcgtcgtgttagatccggtgctttgtcc 120
Query: 394 gaaaacgataacttgagtcaccctacatgatgttatggatgcacaatgggtatacagata 453
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 121 gaaaacgataacttg-gtcaccctacatgatgttatggatgcacaatgggtatac-gata 178
Query: 454 acaccagggatgaatcctacctaagaaagatcattcaaccattagaaactctattagtcg 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 acaccagggatgaatcctacctaagaaagatcattcaaccattagaaactctattagtcg 238
Query: 514 gttacaaaagaattgttgtcaaagattctgctgttaacgctgtttgttacggtgccaagt 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gttacaaaagaattgttgtcaaagattctgctgttaacgctgtttgttacggtgccaagt 298
Query: 574 tgatgattccaggtctacttcgttatgaggaaggtattgaattatatgacgaagttgtat 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tgatgattccaggtctacttcgttatgaggaaggtattgaattatatgacgaagttgtat 358
Query: 634 taatcaccaccaagggtgaggccattgcagttgccattgctcaaatgtctactgtcgatt 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 taatcaccaccaagggtgaggccattgcagttgccattgctcaaatgtctactgtcgatt 418
Query: 694 tagctacttgtgaccacggagttgttgccaaggttaagagatgtatcatggaaagagacc 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tagctacttgtgaccacggagttgttgccaaggttaagagatgtatcatggaaagagacc 478
Query: 754 tatatccaagaagatggggtcttggtccaattgcccaaaagaaaaaacaaatgaaggctg 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tatatccaagaagatggggtcttggtccaattgcccaaaagaaaaaacaaatgaaggctg 538
Query: 814 acggtaagctagacaaatatggccgtg-cmacgaaaatactcca 856
||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 539 acggtaagctagacaaatatggccgtgccaacgaaaatactcca 582
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5829
Number of Sequences: 1807
Number of extensions: 5829
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 856
length of database: 10,358,551
effective HSP length: 16
effective length of query: 840
effective length of database: 10,329,639
effective search space: 8676896760
effective search space used: 8676896760
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.7 bits)